YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|67526513, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	23	0.97
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	68	0.95
Transmembrane Helix	69	91	0.90
Cytoplasmic	92	99	0.84
Transmembrane Helix	100	120	0.94
Non-Cytoplasmic	121	137	0.88
Transmembrane Helix	138	158	0.93
Cytoplasmic	159	278	0.98
Transmembrane Helix	279	302	0.84
Non-Cytoplasmic	303	319	0.81
Transmembrane Helix	320	342	0.86
Cytoplasmic	343	362	0.82
Transmembrane Helix	363	384	0.78
Non-Cytoplasmic	385	393	0.80
Transmembrane Helix	394	413	0.92
Cytoplasmic	414	451	0.94
Transmembrane Helix	452	471	0.90
Non-Cytoplasmic	472	483	0.77
Transmembrane Helix	484	503	0.91
Cytoplasmic	504	518	0.80
Transmembrane Helix	519	536	0.95
Non-Cytoplasmic	537	551	0.83
Transmembrane Helix	552	574	0.89
Cytoplasmic	575	594	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQRISRAAL AVFLLASIAS ALAHGDDHEM DMNMDMDHMD MGASHENAQP ENGDDSPMSY  60
   61 FAYGQYTGWI VAHIALMVVA WCFVLPTAIM LSVARSRMAL LSQFIFLVVN AVGLFVGIVY 120
  121 NSQTPDLYEN NAHHKIGWVA TWVISAQVVM ALIFAYAGRG EKVENAYERA QFLPVSTDDM 180
  181 AETPTTLPAG IRHEYRWSRD SGQGTERNTA SLHSRASSSC PSPSDEYDGF EKPDEDIPEQ 240
  241 SSESRGFMHT GVLDRFLANR VPSLVSVRAL RILNFVYNVI DRLILPLGSI ALVSGGVTYG 300
  301 GIMRDREVFN GLAHFIKGGI FFWYGLITLG RMMGCWADLG WAWNVKPPRE IVGWKAKIRS 360
  361 GEFTESAAIF SYGVSNVFLE HLGGWGGAWT ATDLEHVSIA VLFFGGGLCG MLFESKRVRN 420
  421 WLNSTVLRAP SRLEAHETAN AWNAPDTQEV SLNPMPALII LLLGMMMGGH HQTSMVSSMV 480
  481 HKSWGNMLIG FALARGVTYV LMYLKPPTSY LPSRPPTEIV ASFCLISGGL IFMLSTRNVV 540
  541 EALEYYELDA MFATSIALGL TAFIMAWEIV LIAIKAWALK RQSRPQLAAY RFPA