YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|67528508, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFGAELVGRE TGGQSTDQPY SYRDSARTWD TVTQSVLKAP GWEDSYAVIT IEADKHGNGA  60
   61 HQETVAPSDL RQYAKLANAS QILYAPLIFV TKLSIFLLYL RVFASARRGM TYLSIHLLIW 120
  121 FNLAFYLANF FLKIFQCIPR AKIWDSNTSG HCININIPIL VTAAINVVSD LLMLCLPIIC 180
  181 VWRLQMSIRR KLGISAIFAA GIFGCFASIM RLEVSVRDRN TKDPTYDWYT EITCGILASC 240
  241 LPALPTFFRH FFGKARTMLS RSRTRGSSNR SQDRSLEKAT ELYTLTYPRG QKHHIITDNR 300
  301 LIDQDRELDD DRTQIFSGPS YAVTEARVEG RTPLGQRAYH GDDTVLNGED GSGHCRGILK 360
  361 VVEPSLRKGG GPTRGTQKHW RNFACLDNFS QQPPHRQPVV SPITTVAMAQ ERSGIAVGLN 420
  421 KGHKTTPLNT PKTRISRSKG KASRRTAFVR DIAREVVGLA PYERRVIELL RNAQDKRARK 480
  481 LAKKRLGTFT RGKRKVEDMQ RVIAEARRVG AH

Type	Start	End	Confidence
Non-Cytoplasmic	1	81	0.65
Transmembrane Helix	82	103	0.74
Cytoplasmic	104	111	0.72
Transmembrane Helix	112	134	0.83
Non-Cytoplasmic	135	158	0.76
Transmembrane Helix	159	182	0.82
Cytoplasmic	183	191	0.84
Transmembrane Helix	192	212	0.93
Non-Cytoplasmic	213	231	0.84
Transmembrane Helix	232	253	0.81
Cytoplasmic	254	512	0.84