YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|40742111, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.44
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	20	0.43
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	202	0.76
Transmembrane Helix	203	224	0.75
Cytoplasmic	225	232	0.64
Transmembrane Helix	233	255	0.75
Non-Cytoplasmic	256	275	0.73
Transmembrane Helix	276	295	0.75
Cytoplasmic	296	305	0.76
Transmembrane Helix	306	331	0.83
Non-Cytoplasmic	332	442	0.66
Transmembrane Helix	443	463	0.51
Cytoplasmic	464	469	0.42
Transmembrane Helix	470	492	0.71
Non-Cytoplasmic	493	695	0.54
Transmembrane Helix	696	713	0.39
Cytoplasmic	714	1144	0.70
Transmembrane Helix	1145	1167	0.91
Non-Cytoplasmic	1168	1191	0.87
Transmembrane Helix	1192	1213	0.90
Cytoplasmic	1214	1220	0.83
Transmembrane Helix	1221	1241	0.93
Non-Cytoplasmic	1242	1246	0.83
Transmembrane Helix	1247	1267	0.93
Cytoplasmic	1268	1277	0.80
Transmembrane Helix	1278	1298	0.91
Non-Cytoplasmic	1299	1312	0.84
Transmembrane Helix	1313	1332	0.93
Cytoplasmic	1333	1398	0.97
Transmembrane Helix	1399	1420	0.71
Non-Cytoplasmic	1421	1433	0.71
Transmembrane Helix	1434	1455	0.77
Cytoplasmic	1456	1462	0.91
Transmembrane Helix	1463	1484	0.94
Non-Cytoplasmic	1485	1503	0.89
Transmembrane Helix	1504	1527	0.91
Cytoplasmic	1528	1544	0.81
Transmembrane Helix	1545	1563	0.87
Non-Cytoplasmic	1564	1575	0.83
Transmembrane Helix	1576	1596	0.94
Cytoplasmic	1597	1664	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYWDLGVLLV HCRCGLAGHA ATGPLCLRAS IGSELRFEAI GSDVVSLDVS FRLLDKLQSE  60
   61 GARLAIAEQA LHSASGFRSV CPAIPDFSST LSTSGRKTFS LFQRVCGTSP WGIAERVWPP 120
  121 SPCAPREKGS DLYIPSETRS KAHASPLVTL AAGSQYRHII CDNSTMTSSI NSRPAAGAVA 180
  181 HSSLARRTVG RPDDDPAALV LEAWSQGLMT GSLVIMAAVT FANMRPGVLL HKLILLELIL 240
  241 AMAHGTFIFA PEPVYGCLIS MTVTASANHG WTSDPWWIYT TCNIFWVVKT HYNFGILELV 300
  301 RECPRFGLML ASMCLSIVFI VLDVISVTGA LDAAMPLGIN PFWKCLCDTI ILDDFKTALD 360
  361 KLSARWLARN GMNGVHASGN RPFVRNRIIT PFSVFSAWWT AYADPHSLRP SSGTGASRSW 420
  421 EDHKHDAIGP ATQEQGSRVP LDFWGMTVDS VPSGMGWFYY TYCFGLEPRA HSLLVTLSAF 480
  481 FGLVLTACKQ PWSIRLQSPE QTMDPHSLPA HDTRRRRNAL ACNTCRRRRT KCDGKRPKCS 540
  541 FCVERGKDCF YQEPQDLPPS PLKAELSRIW EQLDHIAAIV QGRNPRSSPS PNEQQSHAPL 600
  601 TAPGAPQGFP FMTVQSEAFL ILLGLDKYLP MHLEHVERGR QIISAKPSLE SIVMVDLADA 660
  661 SVLLHAFTEQ IYIWYPILHA DFTNEFLEAV TSCFPFSLSS CLTLLVLAIG CVVKCESIVD 720
  721 ALQARPEAAY IQAASAMLPC VLADSSPRSA QCLLLFSIYH LCYAQPCQAH DFVVMASRKM 780
  781 QNYMLKCVER VPGRVSRTGD DVLTSASRSE PDIGNDTTII GNCFWIALLI ERYPDLRAKK 840
  841 SNLDKLTICS ELRVQLDFVD SGIWNMALFA PAPTASSIWT WRELTPSLDS PGSFTSNESV 900
  901 DLSRSDDLSY FVAEIAMRKM LQRCTWATST LAQGRHVYAP IVAVELERQL DEWLQLLPEP 960
  961 LSFRGRGSTC IGSRPLRNSD SAQVEFLRAQ YYAFKASIYW PAVYEALLSS ETDGNLIRHC1020
 1021 AKFFSSYAEF VPSAAAAVAV CKPNLWTLCA SVFTFSMATL LALTEPCLAE VVPQGVYLGL1080
 1081 EVAVNVFDGL AEFAVEIDVN MNCRHTAKQQ DKQHLRPRHL LPFCDRHKTM GILFKKPEGT1140
 1141 EGKAWPAILI SGFVAFGGIL FGGILAMPYW AQTFSTGYRD STGQLNVTSS QSSAIVSILS1200
 1201 AGTFFGALGA APVGDIIGRR WGLIASNGVF VLGVVLQTIA TSIPPFLAGR FFAGLGVGLI1260
 1261 SALVPLYQSE TAPKWIRGFI VGSYQFSITI GLLLASVLNN ATHHRNDSGS YRIPIAVQFA1320
 1321 WSIILVGGML ILPETPRYLI KRDDTKAAAL SLSKLRRLPQ DHESIRQELS EIQANHQFEV1380
 1381 SLGKSGYAEC FRGSLLKRLL TGCGLQALQQ LTGINFIFYY GTQFFKNSGF KNEFVITLIT1440
 1441 NCVNVGSTIP GLYAIDKWGR RPVLLTGAIG MAVSQLLVAV LGTTTTGQDA QGNIIVHNAA1500
 1501 AQKAAIAFIC LYIFFFAASW GPIAWVVTGE IFPLKTRAKS LSMTTATNWL LNWALSFATP1560
 1561 YLVNYGDGNA NLQSKIFFIW FGCCFLCIGF VYFMIYETKG LTLEEVDELY LEVKSARESV1620
 1621 SWSPKGTFAR VAEKGNGSAG ILERTEKGDV GGHREIGAPD GVSV