YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|67900952, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	51	0.98
Transmembrane Helix	52	74	0.92
Cytoplasmic	75	81	0.88
Transmembrane Helix	82	102	0.94
Non-Cytoplasmic	103	143	0.95
Transmembrane Helix	144	164	0.93
Cytoplasmic	165	171	0.86
Transmembrane Helix	172	194	0.89
Non-Cytoplasmic	195	205	0.86
Transmembrane Helix	206	227	0.91
Cytoplasmic	228	240	0.84
Transmembrane Helix	241	260	0.90
Non-Cytoplasmic	261	272	0.81
Transmembrane Helix	273	293	0.93
Cytoplasmic	294	301	0.84
Transmembrane Helix	302	320	0.93
Non-Cytoplasmic	321	326	0.65
Transmembrane Helix	327	346	0.88
Cytoplasmic	347	357	0.86
Transmembrane Helix	358	377	0.89
Non-Cytoplasmic	378	404	0.87
Transmembrane Helix	405	429	0.92
Cytoplasmic	430	544	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASEGMAPFT PEYASYNWTG APSDYSSLAT NELGGNSRVE NLNKWYQSGD QAYIIVASAM  60
   61 VMLMVPGLGF LYSGLARRKS ALSMIWACMG SMCVVTFQWY FWGYSLAFSP TATNGYIGNL 120
  121 RNFGLMKVLA DPSPGSPLVP NLLYAFYQMQ FCAVTAAIIM GAVAERGRLL PAMVFTFVWA 180
  181 TIVYCPIACW VWNVNGWAFN YGVLDYAGGG PVEICSGLSA LAYSMVLGRR QERMMLNFRP 240
  241 HNVSLILLGT VFLWFGWLGF NGGSSFGANM RATMACWNTN LTAAFGAITW VILDWRLARK 300
  301 WSMVGWCSGT ISGLVAATPA SGFLPPWASV VLGIVTGIVC NYSTKVKYWI RIDDSMDVFA 360
  361 EHGVAGIVGL IFNAFFADDA IVGLDGVNTG SEMGGWLIHN WKQLYIQIAF IVAASAYSFV 420
  421 VSAIVAYAIN AIPGLKLRAS EEAELLGMDD DQLGEFAYDY VEVRRDYLAW TPQKHDQHAD 480
  481 GHEVPAAARY GIGEHSEMML DGEAPTGATN SRGSEVSGVQ EINVKEESQR PAPPTDAEKA 540
  541 AQGL