YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49096690, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.86
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIGSLLVKMG SNWFYTFNHP LLPALPLAQL VMSSQRYERV NAHDDDDTPP SIALQPTSSS  60
   61 PPPSFRSRSA SPSSRRLLHD DPLHRNSTEQ TLADAFDDSD SEADDEPDDR QRLMRAQPDA 120
  121 WTTADTGNNT STSADGVGAA SSSGTGGDAQ VGGRSNTDAT PSRGFQRTST LLPFFGGTSS 180
  181 SGSNRHITSS NDGVFANLAA KPERGEKSED LPPSYEEAAA DATPPYWETT IVAPGISSDE 240
  241 VYVDGLPVGS IFSFIWNAMI SMSFQLVGFL LTYLLHTTHA AKNGSRAGLG LTLVQYGFYM 300
  301 KGGSESSSGG GSDEHITPPD PNSHSFDPNQ VAEGGGSGGD GGGGAAAITT SEWISYVLMI 360
  361 VGWFILIRAI SDFLRARRHE QLVLQSPERG LPVPVIAENE RSETVV

Type	Start	End	Confidence
Non-Cytoplasmic	1	253	0.56
Transmembrane Helix	254	275	0.89
Cytoplasmic	276	283	0.51
Transmembrane Helix	284	300	0.54
Non-Cytoplasmic	301	344	0.93
Transmembrane Helix	345	367	0.85
Cytoplasmic	368	406	0.92