YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|45358216, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.90
Transmembrane Helix	21	36	0.98
Non-Cytoplasmic	37	42	0.66
Transmembrane Helix	43	63	0.91
Cytoplasmic	64	77	0.88
Transmembrane Helix	78	100	0.91
Non-Cytoplasmic	101	106	0.79
Transmembrane Helix	107	128	0.93
Cytoplasmic	129	136	0.83
Transmembrane Helix	137	160	0.89
Non-Cytoplasmic	161	167	0.80
Transmembrane Helix	168	190	0.88
Cytoplasmic	191	201	0.81
Transmembrane Helix	202	221	0.96
Non-Cytoplasmic	222	229	0.79
Transmembrane Helix	230	251	0.92
Cytoplasmic	252	268	0.79
Transmembrane Helix	269	302	0.72
Non-Cytoplasmic	303	321	0.47

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRGAIQLKK TLWKLTKFSE DYFALLVILG SIIGFFNPSI FGWAIPHISL FLGIIMFGMG  60
   61 MTLNKDDFKT VLERPIDVVF GSILQFSLMP LLAFLVITIF HLPTELALGF ILLGSCPGGT 120
  121 ASNVITYLAK GDVALSVAIT TFSTLLAPMI TPILVLWFAG AWIDVSAYSM FLSIVKIVLI 180
  181 PVILGVIINN SLGKKIDSIR QVLPLLSVVA IVLIVGAIIG VNSEKIVSSG VIVLLAVIIH 240
  241 NALGLLLGYI GTKLIGMDEK KSRAVTIEVG VQNSGLAVAL ATIHFSPLAA VPGAIFSVWH 300
  301 NITGPILANY WSKKDKKESF V