YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49084768, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	25	0.97
Transmembrane Helix	26	48	0.93
Cytoplasmic	49	67	0.93
Transmembrane Helix	68	88	0.90
Non-Cytoplasmic	89	102	0.82
Transmembrane Helix	103	124	0.91
Cytoplasmic	125	142	0.96
Transmembrane Helix	143	166	0.91
Non-Cytoplasmic	167	176	0.76
Transmembrane Helix	177	198	0.93
Cytoplasmic	199	208	0.76
Transmembrane Helix	209	228	0.94
Non-Cytoplasmic	229	300	0.75
Transmembrane Helix	301	328	0.75
Cytoplasmic	329	335	0.51
Transmembrane Helix	336	357	0.55
Non-Cytoplasmic	358	364	0.48
Transmembrane Helix	365	388	0.79
Cytoplasmic	389	404	0.88
Transmembrane Helix	405	426	0.93
Non-Cytoplasmic	427	433	0.73
Transmembrane Helix	434	456	0.90
Cytoplasmic	457	461	0.86
Transmembrane Helix	462	483	0.93
Non-Cytoplasmic	484	502	0.92
Transmembrane Helix	503	525	0.91
Cytoplasmic	526	583	0.98
Transmembrane Helix	584	605	0.91
Non-Cytoplasmic	606	616	0.90
Transmembrane Helix	617	641	0.88
Cytoplasmic	642	693	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAVIAAPDE AGVETVTFTA PLTQGFGYGI IIGLGFAFAL VMIFITWSLK RYQHEIITSE  60
   61 MFSTAGRSVK SGLVASAVVS SWTWAATLLQ SSAVAYQYGT SGPFFYASGA TVQIILFATL 120
  121 AIELKRRAPN AHTFLEAIRA RYGTVVHLVF IVFCLMTNIL VTAMLLTGGA AVLNSMTGVP 180
  181 VVAACFLLPI GVVLYTLFGG IKATFITDYM HTVVIVVIIF IFAFSAYASN DRLGSPGKVY 240
  241 DLLVQAALRN PVSGNAEGSY LTMRSKDGGI FWVINLVGNF GTVFLDNGYY NKAIAAHPVH 300
  301 AFPGYVIGGL CWFAIPWLCA TTMGLSALAL EGTRRIASVD VTAGLVLPFA SVELLGYSGA 360
  361 VCTTLMIFMA VTSAFSAQLI AVSSILTYDI YQAYINPAAK GKRLVWVSHL SCVVFAIAMA 420
  421 AFATGLHYAG IGMGYLYLLM GVIISSAVFP GAMTLVWKGQ NWIAAAASPV LGLAMSLVAW 480
  481 LVTTKTEYGV FTVETTGANY PMLAGNVAAL LSPVVFSPVL TYLFGPQNYD YESMRAIRKV 540
  541 DDSDVAAAAH VDLELIPGAS NTNSSPSQQQ QEEEEIRKLN KAAFISRCLT VGMVICFLIL 600
  601 WPIPMYGSGY VFSKKFFTGW VVVGIIWLFG TAFGVILFPL WEGRSSIKRV GKLMLLDAMG 660
  661 RQWKSSALVG QGDEESEESG SGAVTPSEKI VAK