YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|49085238, gi|...
Protein type: Transmembrane
Type Confidence: 0.85
Topology Confidence: 0.60
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLNDCRRKI KCNNSQPCQF CIRAKARCTF DSAYTRGRKF LIPSAYHENG SPVSQRGYYP  60
   61 TLLPTTATSQ PGTAAHQLQV QLSDNGQMQV QGSSSTSSRN SPEPPSTDRQ GHYIGPASGV 120
  121 SFLLRVQKRL HDAISFTEPS GSIFTFGDAP LSLPDFDPSF CMMLPRDEAQ KLIDRYFDFV 180
  181 MPTYRFLHRP TVQAWFGEFY DTLGVMNDRD RNGANAKIAL LFMVFALARV YMPDNERPGP 240
  241 ADLSARYYLA AEHQLSQEKG SIRLTSVQAR LTQCYYLLSQ SRINHCWSLF GTVSHLALAI 300
  301 GLNRERKADP SINGGGMSVI EAECRRRTFW CAYTLDAYLS AALGRPRSFH DEDIDTEFPA 360
  361 CLEDHQLHLP QPQEQPQRGN TSPALSTMLA PLAHMKIARI ISRILRELYS IRPVSDSKRL 420
  421 SFVQSISKEL SVWRSELAWF LDADVLSASL LMPIFQRQRN VLNLTYWHST ILTHRPSMLG 480
  481 NLTRVQDGRS RSSKGGAGGN GSQAQVSVGS STCIAVAAQA QESIKQCLNA AMRIVDIIDE 540
  541 ITQNRQLLGA LWITSYFAFN ATIVLYIHVI QSRALPFHMY STYLSAATRC QSHLSDIAEK 600
  601 GSLSERYCLV LEELRVEAMR QASQPRHTAG DGSFAPANRE NIRNGYSNAR THFPASPETT 660
  661 FYSTALSQAQ AGIPCDAQTS PHTTATSYSG SLEGSAVGFA PDTNGNEIQG LSLSRSSSDC 720
  721 PGWGQFTSII SSGLGNMDLF WGDEGLRL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle