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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|49124494, gi|...
Protein type: Globular with Signal Peptide
Type Confidence: 0.94
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPLSCAASV TAVIQLAGAL ADVCGEYIKK VTNAQKEINY LNEEITRLMR ILESLNGMLQ  60
   61 GPDREKLAAL HKISDDVGTC KVVLENLGKK VNPENTQNSF RWQGFQDWKW PLQSQEIDDA 120
  121 IGQLKRYTSL FVAALQIDHV GFTDPVEQNF DLHDLKIVEE AIHDSFENKN EECFPETRTE 180
  181 LLRQVGNWAE SSHGKCIYWL TGEAGTGKST ISRTVARQLK ERKLFAASFY FRRNEEGRNN 240
  241 MKSLFLAFAQ QLANAVPDLG LEIERTVKDD PYISGKAPAE QFRKLILQPL MTMDLEPVIT 300
  301 LVAVIDALDE CRSDAENDDH DIRVLLRLIP QVQESESVRL RFFMTSRPEL PVRLGFKAVE 360
  361 NSLQNMDLHS IPSSETTRDV SIFLEHSLTQ IRGTHGLPAD WPGEEAINDL LARTLPLFIS 420
  421 AATMCRFISS TYDPQDRLQK VLNDKTSYVS EMARTYLPVL NQVLAGQNEW EAARLNQSFK 480
  481 DIVGPLIALA TPLPVNALSQ LLALKSSITS NHVKSLLNCL HSVLIIPDNP ELPVRPRHLS 540
  541 FRDFLFDSTT KDNKQSEKFW IDEKAIHQKL SDQCLRVMES KLKKNICMLS DDTLQRSEID 600
  601 SNSVNEHLPV ELQYACRYWT QHMMQSWNPA GAVEKACSFL KKYFLHWMEV MSILGVMPEV 660
  661 IRAICRLQSG IQDDKDSELS KFLYDARRFV LNNRHLAETA PLQLYSSGLM FSPEGSITRR 720
  721 IFNYNLSGWS QLPKVEQTWS AEQQTLENHL GPVESVVFSP DGKQLVSGSY DDTVKIWDPA 780
  781 TGELLQTLDG HSGTVESLAF SPDGKLLASG SYDNTIDLWD SATGELLQTF EGHPHSIWSV 840
  841 AFAPDGKELA SASDDSTIKI WDLATGELQQ TLDSHSQSVR SVAFSPDGKL LASSSLDSTI 900
  901 KVWNPATGEL QQSLEGRSGW VKSVAFSPDG KKLASGSEKN TVKLWNPATG ELLQTLEGHS 960
  961 QSVRSVAFSP DGKQLASSSS DTTIKLWNST TGELQQTFKG HDLWIRAVAF SPDGKHLVSG1020
 1021 SDDNTIKLWD LATSELQQSL EDHSRSVHAV AFSPDDKQLA SSSLDSTIKL WDSATGELQR1080
 1081 TLEGHSQGVR SVTFSPDGKL LASNSYDGTI KLWNPLTGEL QQTLTGRSDW VDSVAFSPDG1140
 1141 KQLASGYYDS TIKLWDSATG ELLQTLEGHS DRIQSVVFSP DGKLLASGSY DQTAKLWDPA1200
 1201 TGELLQIFEG HSKWVESVAF SPDGKLLASS SYGETIKLWD PVTGELLQTL NDPDESAGSV1260
 1261 AFSPDGNRLA SVDIFDTKIW DPATGELLQA LKGHSKWVWS RTGAGISIFL DQWLCLQEKR1320
 1321 ILWLPQSYQP FCISVNDGVL VLGHSSGRVS FIQGPRFLIE SEET

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle