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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|40747961, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.57
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTPEGRPSY EPLTPHNTSP VTQALDDPNP VPAGVDLDNE PVDAGLALPA TAPPVNVTGE  60
   61 HRGNRVRFRS FSSYREADDR GFTTEPAPAV TRPPILRNDS DYSVRSYHSM MDYDPVSANA 120
  121 SEASAADLIS RSPPDSDSRQ NSREDIPIHE LGQLKEKPVD GQSEGTPATP DRNMSVRERF 180
  181 RHAGELIRKK TVFLGERLGR DVYDDGGDLG ASLLPDDLEG SFPPLHRSRP HDEEKAGDPN 240
  241 APAEPLPSAE AHRLVRSVTQ SHARRRRPRS AYARSGASTP EGLRPDSWYG SGKFGGGGIL 300
  301 SQLLRLQAVQ SSGSTSAPVS DAESDTESPI SSGAATPKKE KLKWYKKPNH HSTASLVGAS 360
  361 MNLSSATLPA PAEALMTPKR GRRKAYRKTR LEDEIRVTVH IAEILARQRY IMQLCRALMR 420
  421 YGAPTHRMEE YMKMTARVLE VEGQFLYLPG CMIMSFDDPT TRTAEVKLVR VVQGVDLGRL 480
  481 ADTHNVYKNV VHDLIGVEEA ISELDQIMSR KPRFNKWLLV PAYGFASVAV GPFAFQARPI 540
  541 DMPIIFILGS IVGFMQHVLA PKSVLYSNVF EVTAAVLTSF LARAFGSIRS TIGGEEQNLF 600
  601 CFSALAQSSI ALILPGFIVL CASLELQSHQ MIAGSIRMIY AIIYSLFLGY GVTVGTTIYG 660
  661 LMDGNASSEK ECKNLDVYNS VYIQKFCFVP LFVIFVAIIN QAKWKQLPVM ILIALCGYIT 720
  721 NYFSTTKLGS NSEVANTVGA FTIGLLGNLY SRLWRGHAAA AILPAIFVLV PSGLASSGSL 780
  781 IAGLNYADSV RDGIASGNTS NIASQDTSIA SLGFGMVQIA IGITVGLFVS ALVVYPFGKR 840
  841 RSGLFNF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle