YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|74056756, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVIVGYVIV VLSVFGGFVL AGGHLAALFQ PLELLMIGGG AIGAFLVGNN NKVIKATLKA  60
   61 LPTVLKGSKY TRALYMDTLA LLYELLTKIR KEGLMSVEAD VDSPESSPLF SKYPAIMADH 120
  121 HVVEFLTDYL RLMVSGSMNA FEIENLMDNE IETHHHEGEV PAHVIAKIGD GLPAFGIVAA 180
  181 VMGVVHTMES VGLPPAELGI LIAHALVGTF LGILLAYGFV GPLAGRLEQR VHESTKMLQC 240
  241 VKVTLLASIN GYAPAIAVEF GRKVLFSTER PSFSELEVHV KSAKSR

Type	Start	End	Confidence
Cytoplasmic	1	6	0.75
Transmembrane Helix	7	27	0.93
Non-Cytoplasmic	28	33	0.69
Transmembrane Helix	34	53	0.85
Cytoplasmic	54	170	0.96
Transmembrane Helix	171	188	0.91
Non-Cytoplasmic	189	199	0.78
Transmembrane Helix	200	221	0.94
Cytoplasmic	222	286	0.67