YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54859560
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGKHQHFQE PEVGCCGKYF LFGFNIVFWV LGALFLAIGL WAWGEKGVLS NISALTDLGG  60
   61 LDPVWLFVVV GGVMSVLGFA GCIGALRENT FLLKFFSVFL GLIFFLELAT GILAFVFKDW 120
  121 IRDQLNLFIN NNVKAYRDDI DLQNLIDFAQ EYWSCCGARG PNDWNLNIYF NCTDLNPSRE 180
  181 RCGVPFSCCV RDPAEDVLNT QCGYDVRLKL VRGELEQQGF IHTKGCVGQF EKWLQDNLIV 240
  241 VAGVFMGIAL LQIFGICLAQ NLVSDIKAVK ANWSKWNDDF ENHWLTPTIS EVLSTAGPQQ 300
  301 NSLTGAPGPA PPSRHVFFGL GGLYPEPTFK NW

Type	Start	End	Confidence
Cytoplasmic	1	20	0.93
Transmembrane Helix	21	43	0.94
Non-Cytoplasmic	44	63	0.93
Transmembrane Helix	64	86	0.93
Cytoplasmic	87	94	0.82
Transmembrane Helix	95	117	0.92
Non-Cytoplasmic	118	237	0.97
Transmembrane Helix	238	260	0.80
Cytoplasmic	261	332	0.84