YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116095546, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.69
Transmembrane Helix	8	27	0.89
Cytoplasmic	28	44	0.87
Transmembrane Helix	45	65	0.90
Non-Cytoplasmic	66	71	0.82
Transmembrane Helix	72	94	0.86
Cytoplasmic	95	101	0.86
Transmembrane Helix	102	120	0.94
Non-Cytoplasmic	121	132	0.71
Transmembrane Helix	133	152	0.89
Cytoplasmic	153	159	0.72
Transmembrane Helix	160	181	0.91
Non-Cytoplasmic	182	185	0.83
Transmembrane Helix	186	205	0.94
Cytoplasmic	206	211	0.78
Transmembrane Helix	212	231	0.88
Non-Cytoplasmic	232	238	0.73
Transmembrane Helix	239	259	0.93
Cytoplasmic	260	292	0.91
Transmembrane Helix	293	312	0.94
Non-Cytoplasmic	313	317	0.81
Transmembrane Helix	318	339	0.93
Cytoplasmic	340	380	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFQTIVKIFL LVIITAAITP FIRKLAFVLG AVDNPNARRI NKKPMPTIGG LAIFVAFNIG  60
   61 EFVLLRKDFP THELFSVLLA SSVIILTGLI DDILELKPRQ KMFGIFIASL VVYFLAGIKV 120
  121 RELSLPLLGH LQLGWWSFPL TIFWILALTN AVNLIDGLDG LATGVTLISL VTMGIVGFFF 180
  181 LKSWQHYVPI MCIMLAACLL GFLPYNFHPA KIFLGDTGAL YIGFMISVFS LKGLKNVTFV 240
  241 SLLVPILILG VPITDTVYAM IRRKLNKKNI SQADKHHLHH QLMRMGLTHR QTVLAIYGIS 300
  301 LIFSFVSLLS LVSPRWGIWL LILGLLFAVE LFVETIGLLG EKYKPLLHFL QRTINKMERA 360
  361 DPEVKVRRLN RKNTDKKDLR