YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CHLG_ORYSJ
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.92
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	17	0.92
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	97	0.90
Transmembrane Helix	98	119	0.77
Cytoplasmic	120	171	0.82
Transmembrane Helix	172	192	0.87
Non-Cytoplasmic	193	197	0.69
Transmembrane Helix	198	216	0.92
Cytoplasmic	217	224	0.81
Transmembrane Helix	225	244	0.91
Non-Cytoplasmic	245	254	0.68
Transmembrane Helix	255	275	0.87
Cytoplasmic	276	296	0.72
Transmembrane Helix	297	318	0.64
Non-Cytoplasmic	319	323	0.74
Transmembrane Helix	324	344	0.85
Cytoplasmic	345	354	0.76
Transmembrane Helix	355	374	0.74
Non-Cytoplasmic	375	376	0.61

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATSHLLAAA SSTAASSATF RPPLLSLRSP PPSSLRLNRR RHFQVVRAAE TDKETKANAP  60
   61 EKAPAGGSSF NQLLGIKGAK QENDIWKIRL QLTKPVTWPP LVWGVLCGAA ASGNFHWTVE 120
  121 DVAKSIVCMI MSGPCLTGYT QTINDWYDRD IDAINEPYRP IPSGAISENE VITQIWALLL 180
  181 AGLGLGALLD VWAGHDFPII FYLAVGGSLL SYIYSAPPLK LKQNGWIGNF ALGASYIGLP 240
  241 WWAGQALFGT LTPDIVVLTS LYSIAGLGIA IVNDFKSVEG DRALGLQSLP VAFGMETAKW 300
  301 ICVGAIDITQ LSVAGYLFSS GKPYYALALL GLTIPQVVFQ FQYFLKDPVK YDVKYQASAQ 360
  361 PFFVLGLLVT ALATSH