YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|52208085, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSVTYAQLN GWLTAFLWPF VRMLALVAIA PVTGHRSTPV RVKIGLAGFM ALVVAPTLPP  60
   61 IPVATVFSAQ GVWIIVNQFL IGAALGFTMQ IVFAAIEAAG DIIGLSMGLG FATFFDPHSS 120
  121 GATPVMGRFL NAVAILAFLA FDGHLQVFAA LVDSFRLVPV SANLLRAAGW QTLVAFGAAI 180
  181 FEMGLLLALP VVAALLIANL ALGILNRAAP QIGIFQVGFP VTMLVGLLLV QLMAPNLIPF 240
  241 VGRLFDTGVD FVGRVAAGMH

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.83
Transmembrane Helix	12	34	0.86
Cytoplasmic	35	43	0.71
Transmembrane Helix	44	66	0.85
Non-Cytoplasmic	67	80	0.47
Transmembrane Helix	81	115	0.73
Cytoplasmic	116	124	0.49
Transmembrane Helix	125	150	0.76
Non-Cytoplasmic	151	172	0.52
Transmembrane Helix	173	205	0.76
Cytoplasmic	206	211	0.71
Transmembrane Helix	212	235	0.86
Non-Cytoplasmic	236	260	0.73