YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|194512458, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHRAAVPPQT ATRIPRHNRR FHFIYDSGAA MNLHTWWLFV ATVFVVSAIP GPNMLLVMTH  60
   61 GARHGLRRST ATMAGCMTAL VAMLSVSAAG LGVFLEAWPA MFDALRFAGA AYLIYLGVKA 120
  121 WRARVDEPSD AQSNAHAEAA APRAGRSGSA GQGSRWALFR NGFLVAGSNP KAILFAAALL 180
  181 PQFIDASAPT LPQFGILVAT FAVIEVSWYI VYASFGTRIG VTLRSANVAK AFNRLTGGLF 240
  241 VGFGAMMALV RH

Type	Start	End	Confidence
Non-Cytoplasmic	1	34	0.84
Transmembrane Helix	35	57	0.89
Cytoplasmic	58	70	0.80
Transmembrane Helix	71	94	0.87
Non-Cytoplasmic	95	101	0.65
Transmembrane Helix	102	118	0.89
Cytoplasmic	119	157	0.91
Transmembrane Helix	158	180	0.84
Non-Cytoplasmic	181	190	0.78
Transmembrane Helix	191	212	0.88
Cytoplasmic	213	230	0.85
Transmembrane Helix	231	250	0.94
Non-Cytoplasmic	251	252	0.85