YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|186895134, gi...
Protein type:	Transmembrane
Type Confidence:	0.86
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSHRPVFIS KRSLITGALF CRMWRTIIMS VINKTTLGLL TLFCSPSVLA QLPGIISQPL  60
   61 ANGGQSWSLP VQTLVFITTL SFLPAALLMM TSFTRIIIVL GLLRNAMGTP SAPPNQVMLG 120
  121 LALFLTFFIM SPVFDKVYQE AYLPFSQDKI SMDVALDKGS QPLREFMLRQ TRESDLALYA 180
  181 RLANLPPLEG PEMVPMRILL PAYVTSELKT AFQIGFTVFI PFLIIDLVVA SVLMALGMMM 240
  241 VPPASISLPF KLMLFVLVDG WQLLLGSLAQ SFYS

Type	Start	End	Confidence
Cytoplasmic	1	31	0.68
Transmembrane Helix	32	51	0.71
Non-Cytoplasmic	52	73	0.81
Transmembrane Helix	74	98	0.85
Cytoplasmic	99	114	0.80
Transmembrane Helix	115	134	0.88
Non-Cytoplasmic	135	217	0.90
Transmembrane Helix	218	239	0.88
Cytoplasmic	240	249	0.68
Transmembrane Helix	250	269	0.84
Non-Cytoplasmic	270	274	0.64