YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|52784300, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	27	0.99
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	151	0.99
Transmembrane Helix	152	171	0.96
Cytoplasmic	172	188	0.93
Transmembrane Helix	189	208	0.93
Non-Cytoplasmic	209	229	0.93
Transmembrane Helix	230	251	0.92
Cytoplasmic	252	260	0.78
Transmembrane Helix	261	279	0.92
Non-Cytoplasmic	280	294	0.82
Transmembrane Helix	295	316	0.92
Cytoplasmic	317	335	0.91
Transmembrane Helix	336	357	0.94
Non-Cytoplasmic	358	370	0.85
Transmembrane Helix	371	391	0.94
Cytoplasmic	392	408	0.88
Transmembrane Helix	409	427	0.93
Non-Cytoplasmic	428	548	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVMKRATLW AVLAVLCTIL LPKAAFAHAY IVQSTPAENQ ELKKAPEEIK IEFNEAIQNG  60
   61 FHSITVRNSS GERVDSGKTE IDPQNAKIMT VKLKPKLKDD IYSAEWRAVS ADGHPVSGTI 120
  121 PFSIGNIQGG LPKDQQNQAS GLPAADIVIE RVLLYTGFSL FMGAALFQLV WHRPENGWPG 180
  181 DKKRRLKRIT NVALLLTGAA IIIQLPLQTK TNAGVSWIGA FQPSLLKETL LNTTGGTLWL 240
  241 INIAIIALLV FSSNRKGLKS AILSLFLFAG LLFVKSLDGH AASTSAGYMT IAMNFIHLNA 300
  301 ASIWTGGLAM FVLFFGKDWL KPDKSLIWET IRRFSPWALA SAGLLIFSGL FNSFFIVHTL 360
  361 DNLFGTAYGK ALLVKSALVL LMIGLGAFHY FRFRKAPKQQ GGRSMKAEWA VGLLILLTTA 420
  421 VFTNIPSPPA PLPQPFSETK QLTEGNTLSL RISPNMPGSN TFEVTVRNRK GDVVKDIQKI 480
  481 ELTVEKTGLF GDDKESTFSL SKNKDGVFQT KNLNLSEDGI WKIRVHGLTA SFEEIRTVFN 540
  541 AKINKKEF