YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|52784484, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERYDELKKG ETGAWVSIIA YLVLSAVKLA VGLAFHSEAL RADGLNNTTD IIASLAVLIG  60
   61 LRISQKPPDE DHPYGHFRAE TIASMIASFI MMVVGLEVLY SSGEMLFNPK ETTPDMIAAW 120
  121 TAAGSAVVMF LVFLYNKRLA KKVNSHALYA AAADNKSDAY VSIGTFAGIF ASQFNLAWVD 180
  181 TAAAFIIGLI ICKTAWGIFK EAAHSLTDGF DIKHISTYKE TIRKVPGVGN IKDVKARYLG 240
  241 SAIHVEIIVE VRSDLNIAES HDIADEIERR MQEEHSIVHS HVHIEPSKEK

Type	Start	End	Confidence
Cytoplasmic	1	12	0.92
Transmembrane Helix	13	35	0.88
Non-Cytoplasmic	36	43	0.78
Transmembrane Helix	44	64	0.75
Cytoplasmic	65	80	0.77
Transmembrane Helix	81	100	0.91
Non-Cytoplasmic	101	115	0.83
Transmembrane Helix	116	136	0.94
Cytoplasmic	137	156	0.81
Transmembrane Helix	157	174	0.59
Non-Cytoplasmic	175	175	0.43
Transmembrane Helix	176	197	0.74
Cytoplasmic	198	290	0.80