YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|52785918, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQQPKHHGS IPKGMHKTKP KEFKKTLLRL ARYLKPRTFQ LVLVVFAAIL ATLFNVISPK  60
   61 LLGDATSSLF ASFKEGTGVQ FGFLGRITLI LAGLYLLSAL FTFLQHYLMA GVAQKTIYEM 120
  121 RQEVNEKLTR LPLKYYDKHS HGDTLSRAVN DIDNINTSLQ QALTQMITSV ITIVGIIVMM 180
  181 LLISPVLTLV VFITVPLSML AVRFIASFSQ KHFAAQQKEL GDINGHVEEM FTGHQEVKAF 240
  241 GHEEKAIQQF DEVNERLYQS GWKAQFISGL MMPMMTFIGN LGYVFVSITG GIFVLNGTLL 300
  301 IGGVQAFIQY TQQFSQPLVQ AAGIANTIQS AIASAERVFS LLDEEEETGE TPASIDTGKL 360
  361 KGDVSFEHVA FGYDKNVPVI RDLSLHAKEG QTIAIVGPTG AGKTTIINLL MRFYELNKGS 420
  421 IKVGGTDISE LSREQARSMF AMVLQDTWLF NGTIRENIAY GREGATEEDI IRAAKGAYAD 480
  481 DFIRTLPDGY DTVLGEDAQN ISQGQRQLLT IARAILADPK ILILDEATSS VDTRTEMNIQ 540
  541 KAMNKLMANR TSFVIAHRLS TIKDADMILV MKNGDIIEKG SHEELLRKNG FYADLYNSQF 600
  601 SREEAVS

Type	Start	End	Confidence
Cytoplasmic	1	37	0.96
Transmembrane Helix	38	58	0.92
Non-Cytoplasmic	59	82	0.86
Transmembrane Helix	83	104	0.86
Cytoplasmic	105	162	0.91
Transmembrane Helix	163	183	0.81
Non-Cytoplasmic	184	185	0.50
Transmembrane Helix	186	207	0.73
Cytoplasmic	208	276	0.64
Transmembrane Helix	277	308	0.79
Non-Cytoplasmic	309	607	0.89