YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46237479
Protein type:	Transmembrane
Type Confidence:	0.58
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENRCRGLSQ GQTFLLLTGL MLLFILPSVV KEPSTRVSRQ FIEDNESSLQ GVPQKPAPQG  60
   61 PIVTLTPTVH NKKTTSVRTK WVELQKQDRA TARGERGEGV EKKLQAIRLA PENPKGKAEP 120
  121 EVKTPASKHL DKLPRATGAL STRKTQMATG AAPAKKKVVQ PTPTPASFPH LTTQRRQRLK 180
  181 ASDFKSEPRW DFEEEYSLDG GSLQTLPWFL KITVSHSPWV QNIFLPNITL FLDSGRFNQS 240
  241 EWYRLEHFTP PFGFMELNQS LVQKVVSRFP PVPQQQLLLA SLPTRNLTCI TCAVVGNGGI 300
  301 LNNSRMGQEI DSHDYVFRLS GTVIKGYEQD VGTRTSFYGF TAFSLGQSIL NLGSSRFSAC 360
  361 AFLGKDVRYL HFLEGTRDYE WLEAMFLNRT MANTKLYWFR HRPQEAFREA LDLDRYFLVH 420
  421 PDFLRYMKNR FLRSKTLDTA HWRLYRPTTG ALLLLTALHL CDKVSAYGFI TQGHERFSDH 480
  481 YYDTSWKRLI FYINHDFALE RTVWKRLHDE GIIQLYQRP

Type	Start	End	Confidence
Cytoplasmic	1	10	0.52
Transmembrane Helix	11	30	0.54
Non-Cytoplasmic	31	519	0.98