YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|53715241, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDRELHIIQ KVWTNLCRFA LAGVFIFSGF AKAVDPLGSE YKIQDYLDAF GMGTWFPAFF  60
   61 PLLAGIVLSA IEFSVGIFLF FGIRKTTATW LALLLMIFMT PLTLYLALAN PVSDCGCFGD 120
  121 AWVLTNWQTF WKNIILLIAA ISVFRWKHQM IRFISAKMEW LVSLYTFLYV FALSFYCLGN 180
  181 LPILDFRPYK IGKNIPEGMD VPEGAKPTVY ESVFVLEKNG EKKEFSLENY PDSTWKFIEA 240
  241 RTIVKEKGYE PSIHDFSMTN LETGEDITEE VLSDKNYTFL LVAHRIEEAD DSNIDLINEI 300
  301 YDYAVEHGYR FYCLTSSLDD QIEQWKDKTG AEYPFCLMDD ITLKTMIRSN PGLMLIKEGT 360
  361 ILNKWSDSEL PDEYALTDKL ENLELGKQKE ESDVHTIGYV LLWFAIPLLM VLGVDILVVK 420
  421 RLEKRRKRAA EKAVENSKSS SEA

Type	Start	End	Confidence
Cytoplasmic	1	13	0.90
Transmembrane Helix	14	34	0.89
Non-Cytoplasmic	35	57	0.93
Transmembrane Helix	58	81	0.92
Cytoplasmic	82	88	0.82
Transmembrane Helix	89	109	0.94
Non-Cytoplasmic	110	128	0.91
Transmembrane Helix	129	146	0.96
Cytoplasmic	147	159	0.87
Transmembrane Helix	160	179	0.91
Non-Cytoplasmic	180	396	0.99
Transmembrane Helix	397	419	0.92
Cytoplasmic	420	443	0.98