YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54308145, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.85
Transmembrane Helix	8	27	0.96
Cytoplasmic	28	41	0.84
Transmembrane Helix	42	63	0.92
Non-Cytoplasmic	64	88	0.91
Transmembrane Helix	89	110	0.84
Cytoplasmic	111	121	0.85
Transmembrane Helix	122	144	0.90
Non-Cytoplasmic	145	176	0.91
Transmembrane Helix	177	198	0.89
Cytoplasmic	199	210	0.86
Transmembrane Helix	211	232	0.92
Non-Cytoplasmic	233	247	0.89
Transmembrane Helix	248	265	0.94
Cytoplasmic	266	273	0.86
Transmembrane Helix	274	294	0.92
Non-Cytoplasmic	295	311	0.81
Transmembrane Helix	312	332	0.95
Cytoplasmic	333	351	0.94
Transmembrane Helix	352	374	0.93
Non-Cytoplasmic	375	392	0.83
Transmembrane Helix	393	414	0.88
Cytoplasmic	415	424	0.92
Transmembrane Helix	425	445	0.94
Non-Cytoplasmic	446	450	0.89
Transmembrane Helix	451	471	0.92
Cytoplasmic	472	490	0.93
Transmembrane Helix	491	511	0.94
Non-Cytoplasmic	512	616	0.98
Transmembrane Helix	617	636	0.95
Cytoplasmic	637	662	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIPEIGQFAL IVALGLSALA SIYPLYGASI GNQPMMRMAR PLSYGAFGML VLSFFALCWS  60
   61 FYTNDFTVTY VASNSNSLLP WYYRVTAVWG GHEGSLLLWV LIQAGWAAAV ARFSRDMPLE 120
  121 SVARVLAVMG MISVGFLLFI IVTSNPFLRL LPYFPVDGRD LNPLLQDPGL IIHPPMLYMG 180
  181 YVGFSVAFSF AIASLMTGRL DTAWARWSRP WTIAAWSFLT VGIALGSWWA YYELGWGGWW 240
  241 FWDPVENASF MPWLAGTALM HSLAVTEKRG TFKAWTVLLA ISAFSLSLLG TFLVRSGVLV 300
  301 SVHAFASDPA RGMFILGFLI VVIGGSLLLY ALRGGKIKSR GSYSLFSREN LLLSNNILLI 360
  361 AALLVVLIGT LLPLVHKQIG LGSVSIGVPF FNTLFTWLMI PFAFLLGIGP LVRWKRDEVA 420
  421 NVRKPMLISG AITLPLAFAC IAIFTDSLEP MAVLGLTMSI WIVTMHGFEL YQRATHRHTF 480
  481 MKGVGKLGRS HWAMILGHMG LAVSVIGITL VSNYDLERDV RLAPGETTQV QGYDFYFDGL 540
  541 RDADGPNYDG YIADFTVTRN GKSVTTLHAE KRFYSTTGSM MTEAAIDSGV TRDLYVAMGE 600
  601 KLDDHAWAVR IYYKPFINWI WFGAALMGLG GAIAISDKRY RFRKKASEKT GSTIKQAEVT 660
  661 NE