YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54308236, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.86
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTFGLTKGTT KGGPYWIRII IIAKEIVMAD KKATLHIEGK APIELPILGG SQGPDVIDVR  60
   61 KLGASGYFTF DPGFLATASC ESQITYIDGD KGILLHRGYP IDQLANNADY LEVCYVLLYG 120
  121 EVPTRAQYEF FRTTVTRHTM VHEQIASFFH GFRRDAHPMA VMCGVVGALA AFYHDSLDIN 180
  181 NDSHREITAF RLLSKMPTLA SMCYKYSIGQ PFIFPRNDLD YAENFLHMMF ATPCEEYDVS 240
  241 PVIARAMDKI FTLHADHEQN ASTSTVRLAG SSGANPFACI AAGIASLWGP AHGGANEACL 300
  301 KMLEEIGSVD KIAEYIERAK DKDDPFRLMG FGHRVYKNYD PRATVMREAC HEVLEELNIQ 360
  361 DPLLDIAMEL ERIALSDPYF IDKKLYPNVD FYSGLILKAI GIPISMFTVI FAMSRTVGWI 420
  421 AHWSEMHGDP DNRIGRPRQL YTGKLQREFK PLHERE

Type	Start	End	Confidence
Non-Cytoplasmic	1	394	0.63
Transmembrane Helix	395	418	0.66
Cytoplasmic	419	456	0.54