YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46913198, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.86
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	19	0.85
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	252	0.91
Transmembrane Helix	253	273	0.92
Cytoplasmic	274	283	0.75
Transmembrane Helix	284	308	0.89
Non-Cytoplasmic	309	323	0.73
Transmembrane Helix	324	345	0.91
Cytoplasmic	346	365	0.80
Transmembrane Helix	366	387	0.93
Non-Cytoplasmic	388	403	0.77
Transmembrane Helix	404	425	0.87
Cytoplasmic	426	442	0.61
Transmembrane Helix	443	466	0.78
Non-Cytoplasmic	467	478	0.80
Transmembrane Helix	479	500	0.80
Cytoplasmic	501	506	0.84
Transmembrane Helix	507	530	0.87
Non-Cytoplasmic	531	546	0.77
Transmembrane Helix	547	568	0.90
Cytoplasmic	569	579	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIAIVTACP SGIANSVIAA GLLEKAAAEL KWNADIESQS TVTASTLLTT EQIKAADYIV  60
   61 IAASTAVDTS RFAGKKVYQS AVSACFSDPK AYLELAVDKA AVLSASELKN AEAAVSNTSG 120
  121 KKKIVAITAC PTGVAHTFMA AEALEQEGQR QGHDIKVETR GSVGAKNQLT DEEISAADLV 180
  181 IIAADIEVDL ARFDGKKLYK TSTGLALKKT KQEMDKAFSS ASVYKHEAGS ASSSAQNQEK 240
  241 TGAYKHLMTG VSHMLPLVVA GGLSIALSFV FGIEAFKEEG TLAAALMTIG GGSAFALMVP 300
  301 VLAGFIAFSI ADRPGLAPGL IGGMLASSTG AGFLGGIVAG FLAGYSAKFL ADKVKLPQSM 360
  361 EALKPILIIP LVASLITGLI MIYVVGGPVA AAMTGLTEFL NNMGSANAVL LGIILGCMMC 420
  421 FDLGGPVNKA AYTFGVGLLA SQTYAPMAAV MAAGMVPAMG MGLATFLAKR KFNSSESEAG 480
  481 KASFVLGLCF ISEGAIPFAA RDPMRVIPCC MAGGALTGAL SMLFGAQLMA PHGGLFVLLI 540
  541 PNAISPALMY LVAIAAGTLV TGISYALLKK SDQEQLVTA