YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46915026, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDKETNNDN AATNNQAAGS KATHKQGQSS AKAQAPQTST QREAAKAEAN KTASTVSSSA  60
   61 APKATEAKKA TEAKAETNTT EKKAAAKPAM PPAEKKSGSK TGAIAIALVI ALGAGLYYHG 120
  121 HQQSLAQEAQ IAALQQQIAN ISNQVQTSQK ETIGQVDQSL QRTQVVIEQQ DKSISSLQLA 180
  181 LSEMEGRRPN DWLLAEADYL IKMAGRKLWL EHDVISSTTL LESADHRIAE LNDPSLRNVR 240
  241 KAMSNDITSL KAVARIDRDG LVLRLTSLQE QVATLPLANA IIPEAEAVEE NAVSTSVDDW 300
  301 QINLKTSLKN FSEHFVTYRQ RDGSVIPLLS PKQDFYLQEN IKSKLETAIH SVYREQGKVY 360
  361 ATSLTMAKQW AEQFYNLDNP ATQSFINTLD QLAKENIEAS YPDRLQSQPI ISDLINERLR 420
  421 GKVKPLSSEE NPA

Type	Start	End	Confidence
Cytoplasmic	1	100	0.93
Transmembrane Helix	101	120	0.90
Non-Cytoplasmic	121	433	0.99