YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55250106, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.93
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRYITLLVLL LLNVINAARS HGDLAWAHRS VKNRLSRDVS CREGLEYPHE NICCLNCPAG  60
   61 TYVKKACAAA AEKGVCAPCG FDTYTEHDHG LLKCISCDKC RIDQETIEKC TSTQNTRCKC 120
  121 RNGSFCLPDQ ACEVCKKCSR CKEDEETEKS CTAISNTVCR KRSSPGSSTS MTFIVIMPLI 180
  181 VLLACVLCIV YWTKSKQNKT AVTSRSPREM VKICMGDSEE VREEKQNDHN SRIDDSSQLQ 240
  241 PFLEQNYVVG TSVPHPSEAE KDKGLGDSLP NTANSSQTSL AMCAVPSDLQ SCHTNQSSSS 300
  301 VLAWQPPALE SESSRRLVPL SGEESLKKTF DFFEEIDVHY HNRFFRLIGL SDNAIKSAES 360
  361 LFPEDRVHEL LKIWMEKEGL KADFNSLIDA LIYLDQRLSA ENIIAKAINN SCFKYEEE

Type	Start	End	Confidence
Signal Peptide	1	17	0.99
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	170	0.99
Transmembrane Helix	171	192	0.93
Cytoplasmic	193	418	0.97