YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|182891962, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNQQNEYAVT RSWGSAILDA FEGSAVFPNF SLKLNGTGLE PLLLSRAVPL GLVLGFFITF  60
   61 AIAGNILVIL SVVCNRHLRS PTNYFIVNLA IADLLLGTTV LPVSATLEVV GHWVFGRIFC 120
  121 DVWAAVDVLC CTASIMSLCV ISIDRYIGVS HPLQYPNIVT GRRALLAMLG VWVLSLVISI 180
  181 GPLLGWKEPP SPDDTVCAIN EEPFYALFSS LGSFYIPLIV ILVMYCRVYV VAKRTTKNLE 240
  241 AGVKTESMNS GEITLRIHRG SQVHEDAGKS RAHQARNSLT VKLLKFSREK KAAKTLGVVV 300
  301 GMFTLCWLPF FLTLPIVSFN TSLRPPETVS SIIFWLGYFN SCLNPIIYPC YSREFKLAFI 360
  361 RILKCRCRRR RRPGWRAYNY RGSQINSFYS RQDSRDSVNY GSYLNGSQRT LSSSSPSPSY 420
  421 HTKGLSHFQE DGPRLGRSRT PSVLSESILD HHLEPVEEDP RQTVSIQDHA GVSELASKAS 480
  481 E

Type	Start	End	Confidence
Cytoplasmic	1	8	0.57
Transmembrane Helix	9	27	0.51
Non-Cytoplasmic	28	49	0.83
Transmembrane Helix	50	74	0.88
Cytoplasmic	75	83	0.90
Transmembrane Helix	84	106	0.88
Non-Cytoplasmic	107	122	0.83
Transmembrane Helix	123	143	0.95
Cytoplasmic	144	163	0.88
Transmembrane Helix	164	185	0.93
Non-Cytoplasmic	186	205	0.94
Transmembrane Helix	206	229	0.84
Cytoplasmic	230	294	0.97
Transmembrane Helix	295	316	0.91
Non-Cytoplasmic	317	331	0.87
Transmembrane Helix	332	351	0.73
Cytoplasmic	352	481	0.77