YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50085380, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	41	0.85
Transmembrane Helix	42	62	0.74
Non-Cytoplasmic	63	74	0.74
Transmembrane Helix	75	97	0.87
Cytoplasmic	98	107	0.89
Transmembrane Helix	108	127	0.95
Non-Cytoplasmic	128	139	0.68
Transmembrane Helix	140	163	0.82
Cytoplasmic	164	176	0.86
Transmembrane Helix	177	200	0.87
Non-Cytoplasmic	201	208	0.83
Transmembrane Helix	209	229	0.88
Cytoplasmic	230	264	0.96
Transmembrane Helix	265	284	0.95
Non-Cytoplasmic	285	301	0.88
Transmembrane Helix	302	323	0.93
Cytoplasmic	324	330	0.91
Transmembrane Helix	331	351	0.92
Non-Cytoplasmic	352	357	0.88
Transmembrane Helix	358	381	0.90
Cytoplasmic	382	392	0.80
Transmembrane Helix	393	416	0.88
Non-Cytoplasmic	417	423	0.87
Transmembrane Helix	424	443	0.96
Cytoplasmic	444	504	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLLTTGNQS SMSKKTIKPL EIDDVEIVDY DKTKKAIKAA ALGNAIEWFD FGVYGYVAYV  60
   61 LGKVFFPNSS PSVQMIAALA TFSIPFIFRP LGGLFFGRLG DKYGRQKVLA ITIIIMSVST 120
  121 FGIGLIPSYE TIGIWAPLLL LIVKIAQGFS VGGEYAGAAI FVAEYSPDRK RGFMGSWLDF 180
  181 GSILGFVVGA GIVSLISFSV GEAAFMEWGW RIPFYLALPL GLIGLYLRHS LDETPTFQAH 240
  241 NESQAQLKKP KKISFSQILQ QHKRSLLVCV GLVICTNVTY YMLLTYLPSY FSHNLGYSED 300
  301 HGVLIIIAVM VGMLFVQPFV GLLSDKIGRR PFVFAGSIAL VLFSYPAFLL LDTNNSYLIF 360
  361 FGLLILALSL NMLIGVMAST LPALFPTEIR YSALAIAFNI SVVIAGLTPT VTAALVETTQ 420
  421 NIMVPAYYLM ICGVFGIITA IYLKETANLP LKGATPMAGD SEEAEELLEQ YHENIEQKIE 480
  481 HLDEQIEALQ EKRDKLAKQH PDIE