YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|17934010, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	18	0.96
Transmembrane Helix	19	41	0.91
Non-Cytoplasmic	42	50	0.88
Transmembrane Helix	51	73	0.91
Cytoplasmic	74	82	0.85
Transmembrane Helix	83	117	0.74
Non-Cytoplasmic	118	160	0.46
Transmembrane Helix	161	187	0.83
Cytoplasmic	188	226	0.65
Transmembrane Helix	227	249	0.91
Non-Cytoplasmic	250	257	0.85
Transmembrane Helix	258	279	0.93
Cytoplasmic	280	288	0.90
Transmembrane Helix	289	309	0.92
Non-Cytoplasmic	310	315	0.66
Transmembrane Helix	316	336	0.93
Cytoplasmic	337	347	0.77
Transmembrane Helix	348	368	0.92
Non-Cytoplasmic	369	374	0.89
Transmembrane Helix	375	395	0.95
Cytoplasmic	396	542	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPDRKSPLAP LRHLTYRRIW IASLASNFGG LIQAVGAAWM MTSLSSSENM IALVQASTSL  60
   61 PIMMFSLISG ALADSFDRRR IMISAQLLML TASVLLTVFA WSGWLTPWLL LFFTFMIGCG 120
  121 TALNNPSWQA SVGEMVPRED LPAAVTLNSV GFNITRSVGP AIGGIIVAAA GAAAAFFVNA 180
  181 LSYFTLIYAL FRWQPPKYAS TLPREQLLAA ISAGMRYVAM SPNIGKVLVR GFLFGLSASA 240
  241 ILALMPIVAR DLVEGGPLTY GVMLGAFGVG AIGGALVSAR LREVMSSEWI VRVAFLGFAF 300
  301 SSGVTAVSTS SIITSLVLAI AGACWVLALS LFNTIVQLST PRWVVGRALS LYQTLTFGGI 360
  361 AVGSWLWGEL AEDYGISYSL LCSCVLMLLG VVVGLKLAMP AFASLNLDPL NRFVEPPLRL 420
  421 DVKPRSGPIA ILIDYEIHDE DLGEFLPLMA ERRRIRLRDG ARNWNLMRDL ENPDIWTESY 480
  481 HVPTWVEYVR HNHRRTQADA EAWDRLLELH RGKTRPRVHR MIERQTIPPT DDIFHKPHTD 540
  541 QH