YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15157909, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.53
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIGHRPLLAA LERGHCASYT FVMKRRNFFR FSALGLLALA GGGLYARRSS ASAYYSGPIS  60
   61 DHFDGVRFFN PGGTPPGNFM GLLKWRFNGE RATWPETYPS PFPFAKPEAR IDGRDMRVTF 120
  121 VGHASFLIQT AGLNILVDPV WSQRTSPLSF AGPKRVNPPG IRFEDLPPID LVLVTHNHYD 180
  181 HLDMETLKRL HVAHKPLFIT PLGNDAVIRT GVEAARIKVG DWGDVVETGS VKIHFEPCHH 240
  241 WSARGLNDRS MALWAAFVIE TPGGKIYHIG DTGFHEGLNY GAARKKHGEF RLANLPFGAY 300
  301 EPRWFMKGQH QNPAEAVEGM RLCGAAHVCG HHWGTVQLTD EAVDAPLAAL KAALTEQGVE 360
  361 ESRFRPMRPG EVFDVPSA

Type	Start	End	Confidence
Cytoplasmic	1	27	0.49
Transmembrane Helix	28	46	0.50
Non-Cytoplasmic	47	378	0.92