YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54014576, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.97
Transmembrane Helix	20	41	0.89
Non-Cytoplasmic	42	55	0.80
Transmembrane Helix	56	77	0.87
Cytoplasmic	78	86	0.84
Transmembrane Helix	87	111	0.84
Non-Cytoplasmic	112	117	0.64
Transmembrane Helix	118	138	0.90
Cytoplasmic	139	147	0.80
Transmembrane Helix	148	168	0.93
Non-Cytoplasmic	169	175	0.77
Transmembrane Helix	176	196	0.92
Cytoplasmic	197	205	0.91
Transmembrane Helix	206	226	0.95
Non-Cytoplasmic	227	234	0.78
Transmembrane Helix	235	257	0.90
Cytoplasmic	258	274	0.87
Transmembrane Helix	275	297	0.90
Non-Cytoplasmic	298	313	0.79
Transmembrane Helix	314	334	0.87
Cytoplasmic	335	341	0.81
Transmembrane Helix	342	362	0.92
Non-Cytoplasmic	363	371	0.83
Transmembrane Helix	372	392	0.93
Cytoplasmic	393	407	0.76
Transmembrane Helix	408	427	0.89
Non-Cytoplasmic	428	476	0.94
Transmembrane Helix	477	496	0.91
Cytoplasmic	497	678	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGAVAVADA PDQPMSRARI NVVFGTIVLG MLMAALDQTI VSTALPTIVA DLGGAGHMAW  60
   61 VVTAYLLAEA VATALAGKLG DLFGRKLVFQ LSGLIFIAGS MLAGLANGML LLILARGVQG 120
  121 IGAGGLMVTS MALIADIIPL RERGKYQGAL GAVFGVTTVV GPTLGGLFTD HAGWRWCFYV 180
  181 NVPLAILMIL AAARTIPRVR AAAKPIVDYA GIGLVALGVS CLILGLEWGG QEYAWGSWQI 240
  241 LGLFAAAVVL LAGFVAVESR AAEPMLPMRL FRSNVFTVCS ILSFIVGFAM LGAMTYLPAY 300
  301 LQYVDGISAT MSGVRTLPLV AGLFLTSIIS GQVVGRTGRY RYFPIAGTAV MALGLLLMST 360
  361 MGRETSTWLE SLYMLILGLG IGLAMQVLTI VVQNTVPYAD LGTATSGVTF FRTLGSAFGT 420
  421 AVFGTLYSNQ LTPNLTAALT EVRVVSPEAA ADPETLRGLP AEQAVPIIDA YAMSIEHVFR 480
  481 WVVPVALIGF VVAWFLKEVP LRDSARTAAG EVGEGFSAPQ SADRADLLER TVAEALRRAR 540
  541 AQGPVTPAIL ADAGGGMGRG EAWVLGQIAL HTRLRGAARL SAIAAAHRLP EEVLEPFFAR 600
  601 VAAAGQVEIG ADEVRLTPAG EAQMDRVRAA WRRWLRERLQ LADDGDPRDR ELLEQALDVI 660
  661 ANKLLDEQLH EPEAVAVH