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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|15836244, gi|...
Protein type: Transmembrane
Type Confidence: 0.87
Topology Confidence: 0.57
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVRLIVDEG PLSGVIFVLE DGISWSIGRD SSANDIPIED PKLGASQAII NKTDGSYYIT  60
   61 NLDDTIPIVV NGVAIQETTQ LKNEDTILLG SNQYSFLSDE FDPQDLVYDF DIPEENFSND 120
  121 SGDLSDSNEQ GKDLEPRQTS ETNHSPKPKE KLTKDQGSSD PITSGDQELA DAFLASAKAE 180
  181 KNQPRAKVAK KGLKESSNES LNPKEQNAKD SPKGEERTNK PQNAIMEDNG ASPRQDPQPK 240
  241 SAEPSLKNTA RDETPLKENK PVEEKANKKA TPDSPEKKDQ PEEGSKKEGS KIEATPLDSQ 300
  301 KESEDKEAEE AFVQEEEENL TEDNKEDSDS AADANDDTAS DHTAEDNKET PKKVENEKSA 360
  361 VLSPFHVQDL FRFDQTIFPA EIDDIAKKNI SVDLTQPSRF LLKVLAGANI GAEFHLDSGK 420
  421 TYILGTDPTT CDIVFNDLSV SHQHAKITVG NDGGILIEDL DSKNGVIVEG RKIDKTSTLS 480
  481 SNQVVALGTT LFLLIDHHAP ADTIVASLSP DDYSLFGRQQ DAEALERQEA QEEEEKQKRA 540
  541 TLPAGSFILT LFVGGLAILF GIGTASLFHT KEVVPLENID YQEDLAQVIN QFPTVRYTFN 600
  601 KTNSQLFLIG HVKNSTDKSE LLYKVDALSF VKSVDDNVID DEAVWQEMNI LLSKRPEFKG 660
  661 ISMHSPEPGK FIITGYVKTE EQAACLVDYL NIHFNYLSLL ENKVVVETQM LKAIAGHLLQ 720
  721 GGFANIHVAF VNGEVILTGY VNNDDAEKFR AVVQELSGIP GVRLVKNFAV LLPAEEGIID 780
  781 LNLRYPNRYR VTGYSRYGEI SINVVVNGRI LTRGDVIDGM TVTSIQPNAI FLEKEGLKYK 840
  841 IDYNK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle