YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|9107745, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.27
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGFYLIIAI HYYRSRKWSI YAIECHFMGV LNEERLWVWG TSFLDFAARV SGTSYHASSV  60
   61 RLGTVDGRTA LIFATRTAVN ASRAGNTSPP LTSFLWEGTD KRGVKIKGEQ TARTANLLRA 120
  121 ELRRQGITPL VVKPRPKPLF GQAGKRITPK DIAFFSRQMA TMMKAGVPIV GALDILANGQ 180
  181 KNPRMRTMVN QIKNDIEGGS SLYESISKHP VYFDELYRNL VRAGERAGVL ETVLDTIASY 240
  241 KENIEALKGK IRKALFYPVA IVAVALIVSS ILLIYVVPQF EDVFKGFGAE LPAFTQMIVN 300
  301 FSNFMQRWWW AMLALLIVVI GGGLFTYKRS ESMQHLLDRL VLKFPVIGAI MHNSALARFS 360
  361 RTTAVTFRAG VPLVEALGIV AGATGNKVYS DAVFRMRDDV SVGYSINMSM RQVGIFPHMV 420
  421 VQMASIGEEA GALDAMLFKV AEYYEQEVSN AVDGLSSLLE PLIMVFIGVI VGGMVIAMYL 480
  481 PIFKLASVVG

Type	Start	End	Confidence
Cytoplasmic	1	254	0.91
Transmembrane Helix	255	277	0.94
Non-Cytoplasmic	278	307	0.95
Transmembrane Helix	308	327	0.96
Cytoplasmic	328	339	0.90
Transmembrane Helix	340	359	0.51
Non-Cytoplasmic	360	364	0.47
Transmembrane Helix	365	386	0.56
Cytoplasmic	387	412	0.58
Transmembrane Helix	413	427	0.27
Non-Cytoplasmic	428	461	0.55
Transmembrane Helix	462	483	0.93
Cytoplasmic	484	490	0.55