YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30259191, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFLNNSIIY HIAIILYACS ISLYFIDYFQ SNRKANRFAF WLLSIVWVLH SIFMLLRATD  60
   61 SETNPLLTLL SGIYFYVWLL ITMSLVINRF MRIDFLVFFT NVVAFGVSAF SIFTPLGKMS 120
  121 PVLAEQLVSE LVYVHVGMAI ISYATFTVSF IFSIMYLLQY RLLKKKKWNA RLRRLGNLPK 180
  181 LESMSYGLNL FSVPFFLLAI LLGCIWGYTK LDNFHWYDTK VIGSFVVLFV YCAGLYLRAA 240
  241 DVLQGKKIVQ WNIGAFLVML INIFLLSSLS NFHFWYL

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.93
Transmembrane Helix	8	28	0.95
Cytoplasmic	29	37	0.90
Transmembrane Helix	38	58	0.94
Non-Cytoplasmic	59	65	0.86
Transmembrane Helix	66	87	0.92
Cytoplasmic	88	94	0.86
Transmembrane Helix	95	116	0.92
Non-Cytoplasmic	117	138	0.86
Transmembrane Helix	139	160	0.92
Cytoplasmic	161	183	0.92
Transmembrane Helix	184	209	0.85
Non-Cytoplasmic	210	220	0.78
Transmembrane Helix	221	240	0.91
Cytoplasmic	241	247	0.96
Transmembrane Helix	248	270	0.87
Non-Cytoplasmic	271	277	0.73