YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|51976836, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	12	0.92
Transmembrane Helix	13	33	0.92
Non-Cytoplasmic	34	44	0.81
Transmembrane Helix	45	69	0.90
Cytoplasmic	70	79	0.93
Transmembrane Helix	80	102	0.90
Non-Cytoplasmic	103	122	0.92
Transmembrane Helix	123	145	0.89
Cytoplasmic	146	152	0.96
Transmembrane Helix	153	175	0.91
Non-Cytoplasmic	176	200	0.89
Transmembrane Helix	201	220	0.93
Cytoplasmic	221	233	0.84
Transmembrane Helix	234	254	0.94
Non-Cytoplasmic	255	286	0.93
Transmembrane Helix	287	312	0.88
Cytoplasmic	313	322	0.76
Transmembrane Helix	323	344	0.87
Non-Cytoplasmic	345	347	0.59
Transmembrane Helix	348	368	0.89
Cytoplasmic	369	375	0.83
Transmembrane Helix	376	397	0.89
Non-Cytoplasmic	398	416	0.91
Transmembrane Helix	417	435	0.96
Cytoplasmic	436	448	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSMKGRLRP GDTVAIGLML FALFLGAGNL IFPPVLGQQA GENVWVATIG FLVTGVGLPL  60
   61 LAVTAVAFVE GDLKALSSRV HPIFAFVFPL ISYLAIGPFF AIPRTGAVSF EMGMKPFLSE 120
  121 ALVSEWYMLF LFTIIFFGIT WYLSLNPSKL VDWFGKFLTP VLVLIVAVIV GKAIIDPIGE 180
  181 PAAPLAAYKE NAFFGGFIQG YLTMDAISAL VFGIVVVQVI RSKGIKESNQ IAKITVVSGI 240
  241 IAVLGLTLIY LSLAYLGSTS TSLGISENGG LILTNVVNEL YGTGGKILLG LVIILACLTT 300
  301 SVGLTSACAG FFTNLFPKLS HKTIVTMVCV FSLIVSNLGL TQLIAVTLPV LMIIYPVAIV 360
  361 LIVLSYFHKW IGKRNTIYIG AILGALLVSF FNGLESANIK IEAISNVLQM LPLYKEGIGW 420
  421 LIPSCIGGIL GFFFYKSNES SELQKKGA