YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|52143504, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	29	0.96
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	152	0.99
Transmembrane Helix	153	173	0.94
Cytoplasmic	174	186	0.88
Transmembrane Helix	187	206	0.95
Non-Cytoplasmic	207	232	0.92
Transmembrane Helix	233	255	0.89
Cytoplasmic	256	264	0.83
Transmembrane Helix	265	284	0.91
Non-Cytoplasmic	285	299	0.82
Transmembrane Helix	300	320	0.95
Cytoplasmic	321	339	0.90
Transmembrane Helix	340	360	0.94
Non-Cytoplasmic	361	373	0.76
Transmembrane Helix	374	394	0.95
Cytoplasmic	395	405	0.90
Transmembrane Helix	406	426	0.90
Non-Cytoplasmic	427	547	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVMRRVGTW LLLACVLIIL IPKSASAHAY VVKSNPTENE TLKKAPSVVK IEFDEDIQVS  60
   61 SFNTLYVRDT SGKRVDLKDA HIDTKNKKLL EAKLKENLKN GLYSIQWKVI SADGHPIQGV 120
  121 IPFRIGLAEV EADDIQVEEM GYVPQIDMIM ERGILYTSFS LFIGVLFFNL IMYKGNATSV 180
  181 RSRSKNIIWI SLFGILISLL FNLPLQAKIN ADVSWLEAFN PLLLKETLQL SVFSYVWITQ 240
  241 MALISSLIIV AYFAMRREKL SSFKVWSIPI VLFIGILVMK ACNSHAYGLK FKDIAIVMDF 300
  301 LHLFAASLWI GGLSSIILLL RNEDNKWSMY WDMIKRFSPW ATCAVIVIFI TGLFNSTFFI 360
  361 PTIHSLFDTK YGLALLVKIL LFIFMGILGI IHYVKGKMRA EQGLGATVKV EFIIGIIIFV 420
  421 IVAFMTNVQT PPMPPTGPFT ESKQLDNGYE MTLNVSPNKV GQNIFHITLK DENGQPVTNM 480
  481 EQIILTTQSL DMNMGKGSFK VSAVSPGEYE AEGMYINMTG NWNIQVHGLT KSLDSFNMDY 540
  541 KFIVGGR