YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|52143505, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.97
Transmembrane Helix	7	29	0.90
Non-Cytoplasmic	30	41	0.82
Transmembrane Helix	42	65	0.90
Cytoplasmic	66	77	0.89
Transmembrane Helix	78	100	0.90
Non-Cytoplasmic	101	119	0.92
Transmembrane Helix	120	141	0.92
Cytoplasmic	142	153	0.82
Transmembrane Helix	154	174	0.90
Non-Cytoplasmic	175	196	0.91
Transmembrane Helix	197	216	0.95
Cytoplasmic	217	228	0.93
Transmembrane Helix	229	254	0.80
Non-Cytoplasmic	255	282	0.89
Transmembrane Helix	283	305	0.91
Cytoplasmic	306	320	0.79
Transmembrane Helix	321	342	0.91
Non-Cytoplasmic	343	347	0.74
Transmembrane Helix	348	368	0.92
Cytoplasmic	369	376	0.85
Transmembrane Helix	377	396	0.92
Non-Cytoplasmic	397	413	0.83
Transmembrane Helix	414	435	0.90
Cytoplasmic	436	452	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNKVPFSFI VVIGLMLFAL FFGAGNLIFP AMLGQSAGEN VWIANAGFLV TGVGLPLLGV  60
   61 LAFGISGKED LQSLASRVHP VFGIVFTTVL YLAIGPLFAI PRTGSVSYEI GMKPFVPEAM 120
  121 GSSALILFTI IFFSITCFFS LNPAKIVDIV GKILTPIKLT FIGILVVFAF IHPMGEMQAP 180
  181 AEAYTSHAFF KGFQEGYLTM DTLASFVFGI IIINAIKEKG AKTKKDIMIV CAKATLIAAS 240
  241 ILAMIYSALS FMGASSVAKL GHLDNGGAVL AKVSNYYFGS YGGIILGIMV TAACLTTSVG 300
  301 LVSACSSFFH KLFPNVSYKK IAIILSVFSA VVANVGLTQL IAISVPVLIA IYPLAIVLIF 360
  361 LTLLHPLFKG RAEVYQGSLL ITFIVSVFDG LNAAGMKLAV VNDFLTKILP MHEVGLGWIL 420
  421 PALIGGLIGY VISIVKAKNQ VQPAASADKK IG