YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|52145078, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQQLIIGRYI PGNSLIHQLD PRTKLLIVFL YVFVVFLANN AISYGFLFLY ALIALFFAKV  60
   61 PIRYVLSGLK PILWIFLFTF FLHIFTNKEG EVLFQLGWFS IHEKGLEQGI YISIRFFVII 120
  121 LMTTLLTLTT TPIEITDGLE TLLKPLKRIK VPVHEIALMM SISLRFIPTL MDETSKIMKA 180
  181 QSSRGIDFAG GPIKDRMKAI ISLLVPLFIS AFKRAEDLAI AMEARGYQSG EGRTKFRQLR 240
  241 WKTSDTVTII SLLCLACILA WVRS

Type	Start	End	Confidence
Cytoplasmic	1	24	0.65
Transmembrane Helix	25	39	0.78
Non-Cytoplasmic	40	40	0.20
Transmembrane Helix	41	58	0.74
Cytoplasmic	59	65	0.34
Transmembrane Helix	66	87	0.82
Non-Cytoplasmic	88	107	0.51
Transmembrane Helix	108	131	0.79
Cytoplasmic	132	242	0.69
Transmembrane Helix	243	262	0.92
Non-Cytoplasmic	263	264	0.79