YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7479908
Protein type:	Transmembrane
Type Confidence:	0.65
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPQRKDPSWE AAFRDTPRSP GRGRREADCV RQVTVRTAIA VLSGFPSCRP LPQRRGRQVN  60
   61 DSRPRQGAVP SDNPEGLASM VLIPRTLRIR RPRHTGIAVG VVALALTATA CGSNDSSDTA 120
  121 GSEQTASPTA VSEEPAAPAE AAQTAFTSYA SKRPFGDTVS ALKKAVADNG MMILGDLNQA 180
  181 GALKSTGLNL KGAQSFFVGN PAKGKVFFDA NPAIGTVIPL RMYVWAGDDG NSHVGYFDPA 240
  241 AMFTAVDPGL AEGGKQMAMA ADKIAQGATG GSAQPGSKVA ASFVSVASAK SFPDTEKALK 300
  301 KSVADNGMMI LGDLNQAGAL KSTGLHLKGA RSYFVGNPTK GKMFFEANPA IGTVIPLRMY 360
  361 VWAGADGKAH IGYYDPAPLF QAVDAKLADG GEQMKMAASK IAEGAAK

Type	Start	End	Confidence
Cytoplasmic	1	93	0.63
Transmembrane Helix	94	112	0.61
Non-Cytoplasmic	113	407	0.99