YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25305582
Protein type:	Transmembrane
Type Confidence:	0.86
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSKVVINIV SLLTAMQNQV HDESQPLNPK NHNHAPWKKA AASLSLVLLG SGMTLAGGYL  60
   61 AGNQQQLAQK ASDLAVSRVD AAPPLGNNTD PNFVTQVVQR VGPAVVRIEA SRTVTSRLPA 120
  121 EFNDPFFRRF FGSQLPQQQE RVQRGTGSGF LISADGSILT NAHVVDGADT VRVILKDGRS 180
  181 FQGKVLGTDN LTDVAVVKIQ ANNLPTLTVG NSDQLQPGQW AIAIGNPLGL DNTVTTGIIS 240
  241 ATGRTSNQIG APDKRVEYIQ TDAAINPGNS GGPLLNYRGE VIGMNTAIIQ GAQGLGFAIP 300
  301 IKTAQRISNQ LIATGKVQHP YLGIQMVGLT PQIKQNINSD PNSGLTVDRD KGVLVVRVLP 360
  361 NSPAARAGLR AGDVIQKLNG QAVTDASNVQ RAVENAQVGG QLQLELWRNG RNLNLAVQAG 420
  421 AFPTQQQVK

Type	Start	End	Confidence
Cytoplasmic	1	39	0.84
Transmembrane Helix	40	62	0.78
Non-Cytoplasmic	63	429	0.99