YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25527253
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHYTSLNLKK EVNCLVVYAD IVWLLNACID FLLLLLTATV LKKRIKRWRL VLGAFIGSTI  60
   61 VIFAFTPFAS MMTHPIMKLL YSLLIVYTAF GFSTFRNYTQ TVFTFYFVTF MVGGGLIGTH 120
  121 YFLQTNEMVN GLVQSKSVSY GDPISWVFVI FGFPVIYYFS KKRIESVEVT KIHYDQIVKV 180
  181 EIQLAGEELE LAGLIDSGNQ LYDPLTKTPV MIMHISSLEH WLPAWLTEQI YSKTEIPQIP 240
  241 ENDSGWATKL RLIPFRAVGV ENQFLWAIKP DCVRVYHEGS SVVVNKVLIG LNTQQLSTIG 300
  301 EYQCIVHPKM LISQKMVIA

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.83
Transmembrane Helix	21	41	0.85
Cytoplasmic	42	47	0.95
Transmembrane Helix	48	69	0.91
Non-Cytoplasmic	70	75	0.78
Transmembrane Helix	76	95	0.91
Cytoplasmic	96	101	0.85
Transmembrane Helix	102	123	0.93
Non-Cytoplasmic	124	142	0.86
Transmembrane Helix	143	160	0.92
Cytoplasmic	161	319	0.96