YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55276719
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPIVVHAAA VDRRWLLPLA VGSALSLFIL VLLTTVPFPF VPSSTPSPAL FVEHKLAPTP  60
   61 PASRVAGSLP RIAYVISGSA RDAAALRRVL LALYHPRNLY VLHLDAEAPE ADRRELAAGL 120
  121 AAHPVIAAAG NVRVVERANL VTYRGPTMVA STLHAAAALL WGHSGAGGSD WDWFINLSAS 180
  181 DYPLVTQDDL IHVFSKLPRD LNFIDHTSNI GWKEFQRAKP VIIDPGLYMK KKADVFWIPQ 240
  241 RRSVPTAFKL FTGSAWMALS RSLVEYSIWG WDNLPRTVLM YYSNFISSPE GYFHTVVCNA 300
  301 EEFKNTTVNH DLHYIAWDNP PKQHPHYLTM DDLDRMIASD APFARKFHAD EPVLDRIDEE 360
  361 LLSRRAGPDA PTPGGWCAGT GDNGSDPCSV IGNTSFLQPG RGAVRLQRLV TSLLSEEKFH 420
  421 PRQCK

Type	Start	End	Confidence
Cytoplasmic	1	15	0.87
Transmembrane Helix	16	38	0.83
Non-Cytoplasmic	39	425	0.96