YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29829165, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	127	0.97
Transmembrane Helix	128	146	0.92
Non-Cytoplasmic	147	150	0.66
Transmembrane Helix	151	169	0.92
Cytoplasmic	170	177	0.85
Transmembrane Helix	178	198	0.89
Non-Cytoplasmic	199	202	0.83
Transmembrane Helix	203	221	0.93
Cytoplasmic	222	230	0.90
Transmembrane Helix	231	253	0.91
Non-Cytoplasmic	254	260	0.87
Transmembrane Helix	261	280	0.96
Cytoplasmic	281	298	0.90
Transmembrane Helix	299	319	0.94
Non-Cytoplasmic	320	324	0.85
Transmembrane Helix	325	344	0.84
Cytoplasmic	345	370	0.80
Transmembrane Helix	371	390	0.75
Non-Cytoplasmic	391	392	0.62

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNESSWGAPP QAGYWGPSDQ GPAQGAAPAG PTYDAHDAQQ TRPMPIVPDV PAHGGDQDDD  60
   61 RGAARLSGPL FRDDTPQTTS YGSQTPYVTQ SPYGSQTPHG AQPQKPEPMP DAPQPAPAPQ 120
  121 KKSAGRDLGA AIGVGVGLGV VIVASLFVVK AVFVGVIAVA VVVGLWELTS RLEERKGIKA 180
  181 PLVPLAVGGA AMVVAGYVRG AEGAWVAMAL TALAVLVWRM TEPPEGYLRD VTAGVFAAFY 240
  241 VPFLATFVAM MLTADDGPRR VLTFLLLTVV SDTGAYAIGW RFGKHRLAPR ISPGKTREGL 300
  301 VGAVSFAMVA GALCMEFLID DGSWWQGLVL GFAVAASATL GDLGESMIKR DLGIKDMGTL 360
  361 LPGHGGIMDR LDSLLPTAPV VWLLLVIFVG SG