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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PLOD3_RAT
Protein type: Globular with Signal Peptide
Type Confidence: 0.99
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASVPEPRL LLLLLLLLPP LPPVTSASDR PRGANPVNPD KLLVITVATA ETEGYRRFLQ  60
   61 SAEFFNYTVR TLGLGQEWRG GDVARTVGGG QKVRWLKKEM EKYASQEDMI IMFVDSYDVI 120
  121 LASSPTELLK KFVQSGSHLL FSAESFCWPD WGLAEQYPEV GVGKRFLNSG GFIGFAPTIH 180
  181 RIVRQWKYKD DDDDQLFYTQ LYLDPGLREK LKLSLDHKSR IFQNLNGALD EVVLKFDQNR 240
  241 VRIRNVAYDT LPVVVHGNGP TKLQLNYLGN YVPNGWTPQG GCGFCNLNRR TLPGGQPPPR 300
  301 VLLAVFVEQP TPFLPRFLQR LLLLDYPPDR ISLFLHNNEV YHEPHIADAW PQLQDHFSAV 360
  361 KLVGPEEALS SGEARDMAMD SCRQNPECEF YFSLDADAVL TNPETLRILI EQNRKVIAPM 420
  421 LSRHGKLWSN FWGALSPDEY YARSEDYVEL VQRKRVGLWN VPYISQAYVI RGETLRTELP 480
  481 EKEVFSSSDT DPDMAFCRSV RDKGIFLHLS NQHEFGRLLS TSHYDTDHLH PDLWQIFDNP 540
  541 VDWREQYIHE NYSRALDGEG LVEQPCPDVY WFPLLTEQMC DELVEEMEHY GQWSGGRHED 600
  601 SRLAGGYENV PTVDIHMKQV GYEDQWLQLL RTYVGPMTEH LFPGYHTKTR AVMNFVVRYR 660
  661 PDEQPSLRPH HDSSTFTLNV ALNHKGVDYE GGGCRFLRYD CRVSSPRKGW ALLHPGRLTH 720
  721 YHEGLPTTRG TRYIMVSFVD P

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle