YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|61557187, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.71
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAARVLRKQF IQDVTEYLQD TVSKKDLQLL LTKDEAWKVF VAEAELSRDE EASLHEALKL  60
   61 LLKLPTWEDK VRLQKELQDR KKFVEAFPQL KRKLQENIRK LRALADHLDQ VHKGCTISNV 120
  121 VTNSTSAASG VLSILGLALA PVTAGGSLLL SATGLGLGTV ATVTGAATEI VEQTNKWLDE 180
  181 AEARRLLSDT MDTLNTALVL GQKALKLSKK AYDVIKQLKS LGQHIRAIRV ARANPRLLAD 240
  241 AKRLMTSGRL SAPRASQVQN AFEGTALAMT KKARIRGVAT AGVFLAMDVY FLVRDSMDLC 300
  301 DGAKSESGNK LRALAQELEE KLKEVAQIYK SLLVPY

Type	Start	End	Confidence
Cytoplasmic	1	119	0.62
Transmembrane Helix	120	140	0.48
Non-Cytoplasmic	141	336	0.55