YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|82737639, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.82
Transmembrane Helix	12	34	0.89
Cytoplasmic	35	40	0.72
Transmembrane Helix	41	62	0.87
Non-Cytoplasmic	63	73	0.69
Transmembrane Helix	74	95	0.91
Cytoplasmic	96	115	0.87
Transmembrane Helix	116	135	0.87
Non-Cytoplasmic	136	139	0.54
Transmembrane Helix	140	162	0.77
Cytoplasmic	163	167	0.51
Transmembrane Helix	168	186	0.85
Non-Cytoplasmic	187	193	0.49
Transmembrane Helix	194	213	0.84
Cytoplasmic	214	222	0.64
Transmembrane Helix	223	242	0.83
Non-Cytoplasmic	243	251	0.66
Transmembrane Helix	252	269	0.90
Cytoplasmic	270	301	0.82
Transmembrane Helix	302	324	0.76
Non-Cytoplasmic	325	371	0.65
Transmembrane Helix	372	394	0.87
Cytoplasmic	395	407	0.73
Transmembrane Helix	408	427	0.91
Non-Cytoplasmic	428	434	0.58
Transmembrane Helix	435	458	0.86
Cytoplasmic	459	529	0.67
Transmembrane Helix	530	549	0.93
Non-Cytoplasmic	550	556	0.74

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQTWQQLYSP LGSLGLSALA AVIPIVFFFL ALAVFRLKGH VAGSITLALS ILVAIFAFQM  60
   61 PVDMALAAAG YGFLYGLWPI AWIIVAAVFL YKLTVKSGQF EVIRSSVLSI TDDQRLQVLL 120
  121 IGFCFGAFLE GAAGFGAPVA ITAALLVGLG FNPLYAAGLC LIANTAPVAF GALGIPIIVA 180
  181 GQVTGIDAFH IGAMTGRQLP LLSLFVPFWL VFMMDGLRGV KETWPAALVA GLSFAVTQYF 240
  241 TSNFIGPELP DITSALASLI CLTLFLKVWQ PKRAFSEAKG SVGAAVVQPS GSQPSPYSFG 300
  301 EIFKAWSPFL ILTVLVTIWT LKPFKAAFAP GGAMYNFVFN FAIPHLDQLV IKTAPIVAAP 360
  361 TAMPAVFKLD PISATGTAIF LSALISMAVL KINFKTGLTT FKETFWELRW PILSIGMVLA 420
  421 FAFVTNYSGM SSTMALVLAG TGAAFPFFSP FLGWLGVFLT GSDTSSNALF SSLQATTAHQ 480
  481 IGVNDTLLVA ANTSGGVTGK MISPQSIAVA CAATGLVGKE SDLFRFTVKH SLFFATIVGL 540
  541 ITLVQAYWLT GMLVHH