YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25399373
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFAPLDPARW SDANGFDLGP GIRRGNRMGG GVLMAKKSAP GPLEYLRRWQ MQAWLAAVFI  60
   61 FLYAPLIALM AFSFNDSKRN IVWKGFTLKY YEKLFNNSEL LEAFGNSLTI AAASTVISLF 120
  121 LGAAVALALW RFRFPGKTAV DGAMALPIVV PEICMGVAML VFFAKVLPWP QGMPWPLNLG 180
  181 AIIIAHVSFS FPFVAVVVRA RMASFNREME EAARDLGAGE FRTIKDVILP HMAPSLIAGA 240
  241 LLAFTLSLDD FVITFFTAGP DTVTFPVKVY SMVRFSVTPE VNAASTVLIV LTVLLTAAAL 300
  301 KLQGNPAAAA GHGAKDGK

Type	Start	End	Confidence
Cytoplasmic	1	52	0.98
Transmembrane Helix	53	73	0.94
Non-Cytoplasmic	74	109	0.93
Transmembrane Helix	110	130	0.96
Cytoplasmic	131	142	0.83
Transmembrane Helix	143	164	0.91
Non-Cytoplasmic	165	178	0.79
Transmembrane Helix	179	200	0.90
Cytoplasmic	201	226	0.95
Transmembrane Helix	227	248	0.82
Non-Cytoplasmic	249	280	0.78
Transmembrane Helix	281	302	0.86
Cytoplasmic	303	318	0.83