YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|34396741, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRFLAELSR IILGLTFVVS GFLKAIDPQG GAIKISEYFT VFALPKSEGL SLILSILLCC  60
   61 SEFIVGAFLL MGIYRRMAAR FIFLFMAVMT PLTLYLAIFN PVADCGCFGE AFLLTNWHTF 120
  121 FKNVVLFAAA AFLLKKPRRI QTLYSVNGRW LPAILAVSGI IIFTIANQIY LPMVDFRPFK 180
  181 VGKSLRELTQ APAGAPEDVY EYVFVYEKNG KRQEFDMDHL PDDSWTYVDR HEKLIKKGYT 240
  241 PPVTDFLLLR GGEDVTSEIV NKKGITLLLL SPDWENASDD KMDNISEMYD YAQEHAWDFY 300
  301 GVSASTSDDI STWRYNTGAD YPMLFLDAVT VKTITRGNPS LVILRDGVIR GKVSDANFPG 360
  361 VGQAQAFFDR YIGNELYQPS YWGRLLVLAL WVILLLFGCI RKVVFCIGSL RKGVETEQSE 420
  421 TENNSKALKY

Type	Start	End	Confidence
Cytoplasmic	1	7	0.94
Transmembrane Helix	8	26	0.90
Non-Cytoplasmic	27	49	0.87
Transmembrane Helix	50	72	0.93
Cytoplasmic	73	80	0.79
Transmembrane Helix	81	99	0.97
Non-Cytoplasmic	100	116	0.80
Transmembrane Helix	117	134	0.94
Cytoplasmic	135	149	0.82
Transmembrane Helix	150	170	0.91
Non-Cytoplasmic	171	380	0.98
Transmembrane Helix	381	405	0.79
Cytoplasmic	406	430	0.92