YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|33332417
Protein type:	Transmembrane
Type Confidence:	0.58
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANMFALILA IATLVTGIIW CFERFKWGPA RQAKIAAVNA QTAAIKAQTG SAVDNKTLAP  60
   61 AAKQPGWIET CASVFPVLAL VFIVRSFIYE PFQIPSGSMM PTLLIGDFIL VEKFAYGIKD 120
  121 PITQTTLIPT GHPKRGDIAV FKYPLDPRLD YIKRVVGLPG DRVSYNPISK EVTVQPACNT 180
  181 GASCDSALPI TYSASEPSDF VQTFRYSGNG EASAGFFQIP LNQAVPDGGV RLRERTETLG 240
  241 PVAHQILTVP GRQEQLGAYY QQPNQPLGVW VVPEGHYFMM GDNRDNSADS RYWGFVPERN 300
  301 LVGKATAIWM SFEKQEGEWP TGVRLSRIGG IH

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.52
Transmembrane Helix	5	22	0.55
Cytoplasmic	23	65	0.53
Transmembrane Helix	66	84	0.51
Non-Cytoplasmic	85	332	0.87